PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P00170_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 175aa    MW: 19007.1 Da    PI: 12.4826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P00170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000341121461554
                             HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r++ ++  Lr+l+P +     + ls  + Le+Av+Y+  L
  GSMUA_Achr10P00170_001 112 RVRGRLRVLRRLVPGC-----RTLSAGSLLEEAVDYVAAL 146
                             56778889*******9.....78*************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.44897146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-8111164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-7114160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MIPSSASSSS GSRKKRMKRG PKAQPGTKWR TAAQERVYGR RLLEALRATA ELGPRAVKEA  60
ADSALAFTAR GRSRWSRAIL LSPRRRARLL LRTGSKIRRG RRRARAAEAG ERVRGRLRVL  120
RRLVPGCRTL SAGSLLEEAV DYVAALEMQV KAMRALADAL SPAPAAAEPG SRGGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419666.11e-114PREDICTED: transcription factor bHLH147-like
TrEMBLM0RE441e-114M0RE44_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00170_0011e-113(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165858